1266 days ago
1266 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and...nce sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux,...nd (as beta version, via cygwin) Windows. The software is...1262 days ago
IVA: accurate de novo assembly of RNA virus genomes
IVA (Iterative Virus Assembler) designed specifically for read pairs sequenced at highly variable depth from RNA vi...all other virus de novo assemblers. Availability and implementation: The software ru...1106 days ago
QuasR: Quantification and annotation of short reads in R
The QuasR package (short for Quantify and annotate short reads in R) integrates the functionality of several R packages (such as IRanges (Lawrence et al. 2013) and Rsamtools) and external software (e...1055 days ago
1043 days ago
RagTag: a collection of software tools for scaffolding and improving modern genome assemblies
RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: Homology-based misassembly correction Homology-based assembly scaffolding and patching Scaffold merging1026 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein and...nce sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux,...nd (as beta version, via cygwin) Windows. The software is...1001 days ago
961 days ago
VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs
VCF2PopTree is a client-side software written in Javascript and it runs purely within the user’s computer/bro...nian, S., Ramasamy, U. and Chen, D. (2019). VCF2PopTree: a client-side software to...921 days ago