NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262580 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads...t parameters. Circular genome handling to resolve coverage drops near ends of the genome. E-value.&n...o used as an overlapper in a new de novo genome a...2582 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate protei...of horizontal transfer prediction reliability, recognizing orthologous sequences that may have been previousl...2567 days ago
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DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2559 days ago
I-PV: Interactive Protein Sequence Visualization
I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_rec2556 days ago
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Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...an performs multiple (2 or more) sequence alignments with an efficien...a recapitulation of evolutionary sequence rearrangements (such as inver...er "draft" or "finished" quality sequences. Mulan provides a dynamic gr...d data upload from the UCSC Genome Browser, gene annotation, annot...2539 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different pieces of DNA....2534 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...or reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such sequences for ancestral genomes at the internal nodes of the p...2534 days ago