QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (mo...tised 1%) error rate, 100 × coverage Illumina data on average has an error in so...base in the genome. These errors make handling the data mor...2425 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and t...QC results of each fastq file/pair.Currently it supports processing data fro...2420 days ago
2419 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chr...all the ancestral species within the phylogenetic range of interest. All the data on...2414 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and b...software on both simulated and biological realistic data and compared its performance with similar existing software and data sou...2414 days ago
2413 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies a...NA sequences an important part of analysis pipelines. Here we use Ta...quences. This or similar types of analysis, in combination with manual c...es prior to submission of genomic data to public repositories. Our analysis pipeline is open-source and f...2410 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (European eel) TULIP curre...d outputs a graph and scaffold structures. Tulipbulb adds long read sequencing data to...2410 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing tech...and build a suite of tools specifically for MinION data. Results: Here we prese...summarize and visualize MinION nanopore sequencing data. As...2410 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer. It includes a...;re not interested in the quality assement of the raw or event level data, an...2410 days ago