Results for "PA"
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...s for scanning sequences for matches to motifs (FIMO, MAST and GLAM2Scan), scanning for clusters of motifs (MCAST), comparing motifs to known motifs (Tomtom), finding preferred spacings between motifs (SpaMo),...2749 days ago
- ...nversion. Multiple genome alignments provide a basis for research into comparative genomics and the study...that scale well in the lengths of sequences being aligned. For example, a pair of Y. pestis geno...
2030 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...t are located correctly). Specificity: Prodigal's false positive rate compares favorably with other gene...bsp; Download the latest version of Prodigal at the Prodigal github page. or Browse the&nb...2743 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/
2724 days ago
- ...Cactus is a whole-genome alignment package. Requirements git g...ory is needed for smaller genomes. Parasol or SGE for cluster suppo...presently support installation into paths that contain spaces. Until...;progressiveCactus/bin to your PATH environment variable. In or...
2724 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments t...2723 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and unc...es, and user-supplied modules. http://neufeldserver.uwaterloo.ca/~apmasell/pandaseq_man1.html
2718 days ago
- EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.
2713 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and there...the data and bank-tellers the parallel workers. MCE enhances t...ng to work for both children (spawned from fork) and threads....ured automatically as well as spawning and shutdown. MCE::Loop...d provides data sharing capabilities for MCE. It incl...2710 days ago
iTOL: interactive Tree Of Life
...n Ciccarelli, et al., 2006. In addition to the precomputed trees, users can upload and display personal trees and data, using the 'Data upload' page or through a personal user...2710 days ago
