Results for "PE"
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This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own...2692 days ago
- ...ble to dynamically add data to the figure, and providing information for specific data points using mouse...J-Circos uses the Java computer language to enable it to be used on most operating systems (Windows, MacOS...
2692 days ago
- ...gned to align a pair of whole genomic sequences of not only bacteria but also entire chromosomes of vertebrates on a nominal desktop computer. Cgaln performs an alignment job in two...
2687 days ago
- ...nbsp;intersect two interval files), quite sophisticated analyses can be conducted by combining multiple bedtools operations on the UNIX command line. bedtools is developed in the Quinlan laborato...
2685 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...the method for variant calling and allele dosage estimation. Results for simulated and real datasets are discussed and provide evidence that ConPADE performs well as long as enough...2685 days ago
- ...ormatics analysis, and includes content suitable for both beginners and experts. Below are links to traini...lp you get started with your data processing, as well as information for specialized applications. Traini...
2685 days ago
- ...ng files from ftp/http servers. The program has unique features that are specifically designed to deal wit...downloaded files (archive extraction, file conversion, etc.) capable of performing multiple download or...
2683 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2682 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...found in downloads.----- PBJelly -----Read The Paper http://www.plosone.org/...rnal.pone.0047768PBJelly is a highly automated pipeline that aligns long sequenci...raft genomes. ----- PBHoney -----Read The Paperhttp://www.biomedcentral.com/...2682 days ago
splitbam: splits a BAM by chromosomes
...OM__/__CHROM__.bam -R ref.fasta (bam|sam|stdin) Options -h help; This screen. -R (indexed reference file) REQUIRED. -u (unmapped chromosome name): default:Unmapped -e | --empty : generate EMP...2681 days ago
