Results for "R"
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.../Ks computation pipeline developed and based on programs from four widely used pack...ML (including codeml and yn00) and KaKs_Calculator (including 10 substitution ra...ell-annotated genome and a non-annotated genome or even a poorly assembled scaff...2857 days ago
Sushi: An R/Bioconductor package for visualizing genomic data
Sushi: An R/Bioconductor package for visualizing genomic data2856 days ago
- Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art performance across a wide ra...ubsequently generates ab initio gene predictions. AUGUSTUS is a gene...
2002 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as input assembled contigs, paired-end and/or mate pairs seque...ly, that should be less fragmented and with total&n..., mate pairs, fosmids) modular: every step can be ommited or...
2855 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two stru...res, rank and display basepairs in colour and to also visualize corresp...for download and local use for more customized figures and s...
2854 days ago
- Before uploading a data file, check the samples gallery to make sure that your data format is comp...e must be plain text. Your data values must be non-...ch will be collapsed). No two rows or columns may have the sa...are using order, size and color rows/columns in combination t...
2854 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with large volume o...g (NGS) data. NGS technologies brought a dramatic shift in the...higher eukaryotes used to be very expensive endeavor. To get a...s, of which only a few existed around the globe. Naturally, the...
2851 days ago
- The Sybil software package provides a primarily web-based front-end to comparative genome datasets warehoused in a chado relational database. It was dev...stitute for Genomic Research (TIGR) and development continues at...U, New York Medical College, Novartis Vaccines and University of...
2849 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. It can be used to identify and analyse regions of similarity and difference between gen...ad complete EMBL, GENBANK and GFF entries or sequences in FASTA or r...
2849 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake-off" as an attempt...ic assessment of genome assembly software in a rapidly changing field...of genome assemblies and assembly algorithms. http://genome.cshlp.or...2849 days ago
