Dot, an interactive viewer for genome-genome comparison
...interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to...mmonly used software method for aligning genome assemblies. A quick script ca...demand. Dot, an interactive viewer for genome-genome comparison https://dn...2347 days ago
2342 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...tion with different conservative levels, and genetic variation from pan-genome sight. At the same time, analytical result data from many other programs, including genome alignment result and ortholog...2338 days ago
HTTDB - Horizontally transferred transposable elements database
...espite their capacity for transposition inside genomes, they can frequently transpo...een boosted by the unprecedented amount of new genomes available. Despite the recog...gration a viral genomic fragment into the host genome. https://www.ncbi.nlm.nih.go...2338 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of...2332 days ago
karyoploteR: plot whole genomes with arbitrary data
...is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted...of karyoploteR is to offer the user an easy way to plot data along the genome to get broad genome-wide view...1995 days ago
2328 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing the 3...er program in MUMmer4 is easily able to handle alignments of large genomes;2327 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
...g-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org/content/27/5/747.fu...2323 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection...ioinformatics tools (in the realm of genome informatics) combined into a...gt. It is based on a C library named “libgenometools” which consists of...2323 days ago