Dot, an interactive viewer for genome-genome comparison
...ctive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform explorato...used software method for aligning genome assemblies. A quick script ca.... Dot, an interactive viewer for genome-genome comparison https://dn...2359 days ago
2354 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis plat...conservative levels, and genetic variation from pan-genome sight. At the same time, anal...cal result data from many other programs, including genome alignment result and ortholog...2350 days ago
HTTDB - Horizontally transferred transposable elements database
...capacity for transposition inside genomes, they can frequently tran...ed by the unprecedented amount of new genomes available. Despite the recog...ng not only TE specialists to add new events and search the database,...al genomic fragment into the host genome. https://www.ncbi.nlm.nih.go...2350 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV...2345 days ago
karyoploteR: plot whole genomes with arbitrary data
karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted...o offer the user an easy way to plot data along the genome to get broad genome-wide view...2007 days ago
2341 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing...UMmer4 is easily able to handle alignments of large genomes;2340 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution...nbsp;http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org/content/27/5/747.fu...2335 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection...ioinformatics tools (in the realm of genome informatics) combined into a...gt. It is based on a C library named “libgenometools” which consists of...2335 days ago