AliTV—interactive visualization of whole genome comparisons
AliTV, which provides interactive visualization of whole genome alignments. AliTV reads multiple whole genome alignments or automatically generates alignments from the provided data. Optional feature annotations and phy...2371 days ago
Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluat...nly used software method for aligning genome assemblies. A quick script ca...mand. Dot, an interactive viewer for genome-genome comparison https://dn...2366 days ago
2361 days ago
PGAP-X: Extension on pan-genome analysis pipeline
PGAP-X is a microbial comparative genomic analysis platfo...conservative levels, and genetic variation from pan-genome sight. At the same time, anal...cal result data from many other programs, including genome alignment result and ortholog...2357 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs)...eir capacity for transposition inside genomes, they can frequently transpo...ed by the unprecedented amount of new genomes available. Despite the recog...viral genomic fragment into the host genome. https://www.ncbi.nlm.nih.go...2357 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV...2352 days ago
karyoploteR: plot whole genomes with arbitrary data
karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted...o offer the user an easy way to plot data along the genome to get broad genome-wide view...2014 days ago
2348 days ago
MUMmer4: A fast and versatile genome alignment system
MUMmer4, a substantially improved version of MUMmer that addresses genome size constraints by changing...UMmer4 is easily able to handle alignments of large genomes;2347 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"...bsp;http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org/content/27/5/747.fu...2343 days ago