orthodotter: Synteny plots (oxford grid)
...e names -h : help -------------------------------------------------------------------------------- orthodotter -f Vigne_Banane.ortho -toPlot Vigne:Banane:black:1=10,5 -x 120...2520 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively shor...e reduction in errors due to both changes in individual bases and trimming of unu...oneous k-mers in the output reads and preserving the most true k-mers,...2429 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assem...2427 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: go...2424 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologic...2419 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...ntent alone. It implements fast greedy search algorithm and rigorous statistical validation, and its friendly graphical interface allows interactive visualization of the results. We...2419 days ago
2417 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...ission of genomic data to public repositories. Our analysis pipeline is open-source and freely available at http://sdittami.altervista.org/taxoblast and via SourceForge (https://sourcef...2414 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...: The Oxford Nanopore MinION device represents a unique sequenc...echnology. As a mobile sequencing device powered by the USB port of...manipulate, organize, summarize and visualize MinION nanopore sequen...he Windows laptop attached to the device. Availability and implemen...2414 days ago
ONT assembly and Illumina polishing pipeline
...reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illumina dataset onto the contigs obtained in the previous steps using BWA ...2414 days ago