Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new...commonly used software method for aligning genome assemblies. A quick script ca...on demand. Dot, an interactive viewer for genome-ge...2364 days ago
2359 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...integrated to analyze and visualize genomics structure variation, gene distributi...vative levels, and genetic variation from pan-genome sight. At the same time, anal...sult data from many other programs, including genome alignment result and orthologs c...2355 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of...ir capacity for transposition inside genomes, they can frequently transpo...d by the unprecedented amount of new genomes available. Despite the recog...viral genomic fragment into the host genome....2355 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in th...2349 days ago
karyoploteR: plot whole genomes with arbitrary data
karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by the R b...oploteR is to offer the user an easy way to plot data along the genome to...2012 days ago
2345 days ago
MUMmer4: A fast and versatile genome alignment system
...ubstantially improved version of MUMmer that addresses genome size constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a...n MUMmer4 is easily able to handle alignments of large genomes;2344 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cs...2340 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a...bsp;gt. It is based on a C library named “libgenometoo...2340 days ago