IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by Oxford Nanopore&r...ear what will be most informative. We hope that IONiseR will provide a framework for visualisati...2414 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...ontains C++ source code as well as two binary files. The latter were tested under various operating systems, including Windows XP SP3 32bit, Windows Vista 32bit, Windows 2008 Server...2414 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...size is 105Mb; the N50 is 1.94Mb. In comparison, the HGAP3produces a 104Mb assembly with N50 1.61Mb. This dotter plot gives a global view of the miniasm assembly (on...2410 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2410 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...l decades. Recently, a nanopore-based sequencing instrument, the Oxford Nanopore MinION, has become available that we used for sequencing the S. cerevisiae genome. To make use of th...2408 days ago
2408 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "inst...2408 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...escribe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used...ases. Furthermore, both due to extensible nature of XML itself and the provision of <property> eleme...2408 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...bank-to-bank sequence similarity search tool providing significant accelerations...ters without requiring any additional hardware devices. PLAST stands for Pa...is a general purpose sequence comparison tool providing the following benefits:...2406 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with...fic areas of the graph and interact with it by moving nodes, adding labels, chang...2403 days ago