MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads t...rse taxonomical composition of typical metagenome data sets. Based on a database of given genomes, the program allows the user...my, and then to collect reads from the metagenome using...2404 days ago
2398 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can z...2404 days ago
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
An efficient tool called Connecting Overlapped Pair-End (COPE) reads, to connect overlapping pair-end reads using...an the recently published tool FLASH. When COPE is applied to real reads for genome assemb...2403 days ago
Musket: a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error correction algorithm targetting I...r performance evaluation results, in terms of correction quality and de novo genome assemb...2403 days ago
Harvest: a suite of core-genome alignment and visualization tools
Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes, including variant calls, re...hylogenetic trees. Tools Parsnp - Core-genome alignm...2400 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver, eSC also aut...2400 days ago
2400 days ago
Mugsy: multiple whole genome alignment tool
Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairw...Seqan::TCoffee. Mugsy accepts draft genomes in the form of multi-FASTA f...les and does not require a reference genome. To cite Mugsy, use: Angiuo...ultiple alignment of closely related whole genomes...2400 days ago
2396 days ago