ReMILO: reference assisted misassembly detection algorithm using short and long reads.
ReMILO, a reference assisted misassembly detection algorithm that uses both short r...ort reads to both the contigs and reference genome, and then constructs a novel data structure called red-black mu...2191 days ago
ASAR: Advanced metagenomic Sequence Analysis in R
An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional anal...2188 days ago
Epiviz: an interactive visualization tool for functional genomics data.
Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigatio...but allows multiple visualizations of data within genomic regions using...plied visualizations. It also includes data from the Gene Expression...2188 days ago
Nanopolis: polish a genome assembly
Software package for signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improve...2171 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided de novo a...o assemble discreet 'targets' contained within next-generation shotgun sequence data. ARC decomplexifies the tradi...2171 days ago
nanofilt: Filtering and trimming of long read sequencing data
Filtering on quality and/or read length, and optional trimming after passing filters.Reads from stdin, writes to stdout. Intended to be used: directly after fastq extraction prior to mapping in a stream between extraction and mapping https://github.com/wdecoster/nanofilt2167 days ago
LSC :a long read error correction tool
Getting Started These simple steps will help you integrate LSC into your transcrip...SC package. Follow the tutorial to see how LSC works on some example data. Read the manual i...2164 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three alig...2159 days ago
2159 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
This package estimates tumor purity, copy number, and loss of heterozygosity (LOH),...tic status and clonality. PureCN is designed for targeted short read sequencing data, integrates well with standar...2157 days ago