Results for "NT"
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...both probabilistic (MEME) and discrete models (MEME), which have complementary strengths. It also allows...g the biological roles of motifs (GOMo), measuring the positional enrichment of sequences for known motifs...2749 days ago
- ...for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multiple genome alignments provide a basis for research...der a minute, while a group of 9 divergent Enterobacterial genomes can b...
2030 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...(written in very vanilla C). It can analyze an entire microbial genome in 30 sec...locates the 3' end of every gene in the experimentally verified Ecogene data set...itive rate compares favorably with other gene identification programs, and usuall...2743 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/
2724 days ago
- ...Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer py...sk space Instructions IMPORTANT NOTE: Progressive Cactus does...path without spaces" In the parent directory of where you want P...installation and version management. The installation does not cr...
2724 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...f completely sequenced genomes is continuously rising, allowing for...often based on whole-genome alignments to elucidate structural diff...tions, deletions or from rearrangement events. Computational tools t...y arcs. Both methods allow for the integration of additional informa...2723 days ago
- ...W at finding the single best alignment per query and is dramatically...LAST at finding all possible alignments. Unlike other aligners that...h to find the optimal set of alignments that cover a query using a b...culty.virginia.edu/irahall/YAHA. Contact: http://genome.wustl.edu/...
2721 days ago
- ...lexible framework for rapid genome analysis and interpretation C Chiang, R M Lay...eedSeq: ultra-fast personal genome analysis and interpretation. Nat Meth (2015)....http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3505.html...
2721 days ago
- ...ssembles paired-end Illumina reads into sequences, trying to correct...egion of the 16S gene, or the constant regions around zinc finger bi...verlapping region using the complementary strand. When mismatches oc...ome from a single piece of DNA.3.Identify the masking of the end of...
2718 days ago
- EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.
2714 days ago
