G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 12 vertebrates based on original genome...2272 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and envi...- Uppsala2018 February - Uppsala Introduction to Genome Annotation 2015 April - Upps...ala2017 April - Uppsala2018 May - Uppsala De Novo Genome...2267 days ago
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references
AlignGraph is a software that extends and joins contigs or scaffolds by reassembling them with help provided by a reference genome of a closely related organism...eads_1.fa --read2 reads_2.fa --contig contigs.fa --genome...2267 days ago
2265 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-generatio...(both DNA and RNA) to a population of human genomes (as well as to a single reference genome). Based on an extension of BW...index that represents a population of human genomes...2246 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction fo...iction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic...all evidence for genes, from expressed sequences, genome...2246 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemblies into a combined consensus asse...the best segments of the individual assemblies. Genome assembly projects typically r...er algorithm that merges multiple assemblies of a genome...2246 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome...2246 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dis...e to calculate the genetic dissimilarity between samples without any reference genome,...2225 days ago
SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex) to...-DETector work? SEX-DETector does not require prior sequencing of a reference genome:...2224 days ago