NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, togeth...2155 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
Bokeh is an interactive visualization library that targe...rformance interactivity over very large or streaming datasets. Bokeh can help anyone wh...and easily create interactive plots, dashboards, and data applications. To get started...2155 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2150 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase...mapped mates of mapped short reads. Our results on bacterial, fungal and insect data sets show that CoLoRMap compa...2146 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
Mulan: Multiple-sequence local alignment and visualizati..., Mulan supports two-way communication with the GALA database; alignments of multiple s...grated and overlaid with extensive genome annotation data using GALA.2142 days ago
2130 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
SeqMonk is a program to enable the...nd analysis of mapped sequence data. It was written for use with...apped next generation sequence data but can in theory be used for...tures are: Import of mapped data from mapped data (BAM/SAM/bow...sets Statistical analysis of data to find regions of interest...2124 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that pr...ommand-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feat...2124 days ago
2118 days ago
Heatmapper: web-enabled heat mapping for all
Heatmapper is a freely available web serve...users to interactively visualize their data in the form of heat maps thro...ariety of heat maps for many different data types and applications. Heatm...to interactively explore their numeric data values by hovering their curs...2104 days ago