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Qualimap2: Evaluating next generation sequencing alignment data
By Jit 2263 days ago
http://qualimap.bioinfo.cipf.es/
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
Supported types of experiments include:
- Whole-genome sequencing
- Whole-exome sequencing
- RNA-seq (speical mode available)
- ChIP-seq
