Minipolish: A tool for Racon polishing of miniasm assemblies
...ng reads. Racon is a great polishing tool that can be used to clean up assembly errors. It's also ve...e Minipolish comes in. With a single command, it will use Racon to polish up a miniasm assembly, while kee...1678 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...ata. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication and speciation events...1673 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...ocker image is available at https://hub.docker.com/r/biodatageeks/. Supplementary information on benc...ng/benchmarking.html#depth-of-coverage. An archival copy of the code and supporting data is also available...1666 days ago
DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies
...bbs distribution centered around parsimonious solutions, and statistical supports on ancestral and extant adjacencies are provided. DeCoSTAR supports the features of previous...1646 days ago
RePS: Repeat-masked Phrap with scaffolding, a WGS sequence assembler
...te meaningful error probabilities for each base. Clone-end-pairing information is used to construct scaffolds that order and orient the contigs. The updated version of RePS incorpor...1646 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
...ogenome (genbank file as result), and mitogenome visualization. MitoZ is available from https://github.com/linzhi2013/MitoZ. https://academic.oup.com/nar/article/47/11/e63/537...1626 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
You can: improve your Python programming language coding skills. develop deep learning applications using popular libraries such as Keras, TensorFlow, PyTorch, a...1619 days ago
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Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...used) -stage INT: start from which stage (default: 0) 0-start from begining(storing kmers in bloom filter) ; 1-start from count kmers showed up in bloom filter; 2-start f...1614 days ago