Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemb...e alignments in certain regions on demand. Dot, an interactive viewer for genome-genome compari...2364 days ago
GPOPSIM: a simulation tool for whole-genome genetic data
...imulation tool for pedigree, phenotypes, and genomic data, with a variety of population and genome structures and trait genetic architectures. It provides flexible parameter setting...2362 days ago
2359 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...ithms and methodologies have been developed and integrated to analyze and visualize genomics structure var...sult and orthologs clusters, are also supported to be further analyzed or visualized in PGAP-X. The workfl...2355 days ago
HTTDB - Horizontally transferred transposable elements database
...s own proteins and does not contribute to the survival of the host that it inhabi...any taxa. To date, there has been no easy way to visualise each TE or host specie..., we expanded the database to include Horizontal-Virus Transfer also known as end...2355 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To...;gene ID search tool or with the BLAST search tool Click "Visualize context". Consult t...2349 days ago
karyoploteR: plot whole genomes with arbitrary data
...ot depend on other graphics packages. The aim of karyoploteR is to offer the user an easy way to plot data along the genome to get broad genome-wide view to facilitate the identific...2012 days ago
2345 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper...2340 days ago
Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and downloadable software package for offlin...2338 days ago