2645 days ago
CONCOCT: Clustering cONtigs with COverage and ComposiTion
A program for unsupervised binning of metagenomic contigs by using nucleotide composit...ata from paired end reads. Warning! This software is to be considered under development. Functionality and the user i...2645 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
GRASS (GeneRic ASsembly Scaffolder)-a novel algorithm for scaffolding second-generation sequencing assemblies capable of using...S scaffolders using Illumina paired reads of three bacterial genomes. Our algorithm c...2567 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://w...r correction, for which a highly sensitive overlapper is required.Currently, development of a new spliced-alignment mo...2552 days ago
GeneProf: analysis of high-throughput sequencing experiment
...cp. Tutorial 'Examining Public Next-Gen Data..'). Extensibility:Algorithm developers and computer progr...be easily wrapped in the workflow framework (cp. Section 'Module Development: Adding new..') and data from...2523 days ago
MOSS: A System for Detecting Software Similarity
...tecting plagiarism in programming classes. Since its development in 1994, Moss has been very effective in this role. The algorithm behind moss is a significant improvement over other cheating detection algorithms (at least, over those known to...2366 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It us...classes. The structural information based graph properties were used for the development of prediction model. The&nbs...2512 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the a...ckages. However, with the advent of Next Generation Sequencing (NGS) and the development of new sequencing techniques,...2504 days ago
LIBSVM -- A Library for Support Vector Machines
LIBSVM is an integrated software for support vector classification, (C-SVC, nu-SVC), regression (epsilon-S...ts multi-class classification. Since version 2.8, it implements an SMO-type algorithm p...2496 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina read...2399 days ago