Results for "Biology to computer"
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...datasets. Visualizing such big data has posed technical challenges in biology, both in terms of available c...(e.g., 100k+ rows) has been computationally infeasible on both desktop computers and web browsers. In additio...2812 days ago
- IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but we have also...
2806 days ago
- Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mos...
2774 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia...
2764 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-science/data-scienc...gdon/ps/conference/super_biokdd.pdf https://ocw.mit.edu/courses/biology/7-91j-foundations-of-computational-and-systems-biology-...2760 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger....millions of paired end reads within a couple of minutes on a standard desktop computer.
2753 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as ancho...
2750 days ago
- Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genom...only bacteria but also entire chromosomes of vertebrates on a nominal desktop computer. Cgaln performs an alignment...
2688 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecifi...ent and visualization of thousands of intraspecific microbial genomes. Genome Biology,...
2710 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can plot C...s using mouse hover display and zoom in/out functions. J-Circos uses the Java computer language to enable it to be u...
2693 days ago
