poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing devic...2383 days ago
IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
This package is intended to provide tools for the quality assessment of data produced by...is task. However, nanopore sequencing is an emerging and rapidly developing technology. It is not clear what will be...2383 days ago
2377 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technology. The first step of NanoSim is...2358 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
Integration of the Ra assembler - a de novo DNA assembler for third generation sequenci...oped on Faculty of Electrical Engineering and Computing (FER), Ruder Boskovic Institute (RBI) and Genome Institute...2348 days ago
LRCstats: Long Read Correction Statistics
LRCstats is an open-source pipeline for benchmarking DNA lon...g reads outputted by third generation sequencing technology such as machines produced by...he reads produced by third generation sequencing technology, as the name suggests, are lo...2340 days ago
2189 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment app...mp; Yan Gao and developed by Yan Gao in Center for Bioinformatics, Harbin Institute of Technology, China.2210 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trad...sed alignment techniques and do not take the error profile of the underlying technology into account. Memory- and tim...2113 days ago
CoLoRMap: Correcting Long Reads by Mapping short reads
Second generation sequencing technologies paved the way to an exceptional increase in th...correcting noisy long reads, such as the ones produced by PacBio sequencing technology, using high-quality Illumina...2113 days ago