MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for...tributed-memory systems using MPI to overcome high memory overhead barrier and achieve good...1813 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Alonge M, Soyk S, Ramakrishnan S, Wang X, Goodwin S, Sedlazeck FJ, Lippman ZB, Schatz MC: Fast and...focus of this tool is on practicality and therefore has the following features: Good...1704 days ago
WOS-C Women Scientist Scheme KIRAN-IPR
Women Scientist Scheme WOS-C is one among the most coveted programs that Women Scientists in I...ckgrounds for a year, this, in turn, allows them to even work from home and maintain a good...1642 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanou...d memory parallel mode using graph decomposition then use filtering method to generate good...1611 days ago
QuorUM: An Error Corrector for Illumina Reads
We produce trimmed and error-corrected reads that result in assemblies with longer contigs and...hat it is the best performer in most metrics we use. QuorUM is efficiently implemented maki...1603 days ago
Tadpole: an assembler, error-corrector, and read-extender
Tadpole is a kmer-based assembler, with additional capabilities of error-correcting and extend...t do any complicated graph analysis or scaffolding, and therefore, is not particularly good...1603 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
Genobuntu is a software package containing more than 70 software and packages oriented towar...ount of time and energy needed to build software workstations and it can also act as a good...1499 days ago
MMseqs2: ultra fast and sensitive sequence search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge...ndows. The software is designed to run on multiple cores and servers and exhibits very good...1255 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguis...ed on human mitochondrial DNA although the same approaches will work equally good...1096 days ago
QuasR: Quantification and annotation of short reads in R
The QuasR package (short for Quantify and annotate short reads in R) integrates the functional...up to quantification. A single R script can contain all steps of a complete analysis, maki...1048 days ago