MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT)...ignment and error correction algorithms that are much more efficient than the state of a...2241 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and go...error rates, the results demonstrate that it is substantially faster than the state-of-t...2237 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
SOAPaligner/soap2 is a member of the SOAP (Short Oligonucleotide Analysis Package)....d by the algorithms research group of the Department of Computer Science, the University of Hong Kong (T.W. Lam, Alan...2229 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algorithms, it is feasible to study...ng their applications to small data sets with few libraries. Texas A&M University researchers develop a transcr...2188 days ago
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DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by the...Windows. It will produce a figure using the data that are represented in the Central/South Asia...1923 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can a...ons is available. Users are able to directly set an annotation to a specific state, cho...1856 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
MSAProbs is a well-established state-of-the-art multiple sequence alignment algorithm for protein sequences. The design of MSAProbs is based on a combination of pair hi...1817 days ago
CLARK: Fast, accurate and versatile sequence classification system
CLARK, a method based on a supervised sequence classification using discriminative k-mers. Considering two d...nce genome), CLARK outperforms in classification speed and precision the best state-of-t...1596 days ago
GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns
GSP4PDB is a user-friendly and efficient application to search and discover new pat...art of the services provided by the Bioinformatic Group of the University of Talca http://gdblab.com/g...1567 days ago