Managing and Analyzing Next-Generation Sequence Data
Centralized Bioinformatics Core Facilities provide shared resources for the computational and IT requirements of the investigators in their department or institution. As...3666 days ago
A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest and also how to get new insights about it. The tutorial is divided in three main part...3664 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis r...tional pipelines that use different software packages is difficult due to a lack...ting of publicly available research software and specifically designed pip...k for NGS analysis in microbiology. Bioinformatics [Epub ahead of print]....3601 days ago
Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command line interf...a tool will be used. Here I present ten recommendations for command line software author’s tools to follo...3646 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Sear...oduction to PERL, Python, R and C/C++ for Bioinformatics3631 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricte...rt-read "NGS" sequencing data is open-access published via Advance Access in Bioinfor...3601 days ago
3586 days ago
Swabs to Genomes: A Comprehensive Workflow
The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and exp...reparation and sequencing, and inexperience with bioinformatics can pose a significant barrie...en a lab or classroom with limited resources and bioinfor...3583 days ago
Java utilities for Next Generation Sequencing by Pierre Lindenbaum
Java utilities for Bioinformatics https://github.com/lindenb/jvarkit3547 days ago
3542 days ago