Results for "de novo assembly"
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Tools for making blobplots or Taxon-Annot...to visualise the contents of genome assembly data sets as a QC step Blaxt...to visualise the contents of genome assembly data sets as a QC step. This...in the paper to create a preliminary assembly, and to create and collate GC...2934 days ago
- The Genome Assembly Evaluation Metrics and&...p;Reporting (GAEMR) package is an assembly analysis framework composed a...leteness -- how many pieces in an assembly composed of, how well those p...ture of the condition of a genome assembly.
2934 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atyp...ences and the query genome. These scores are useful not only for large-scalede novo&nbs...
2926 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Mul...rsity measures. UCHIME >Chimeric sequence detection. PILER >De novo gen...2912 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo ass...2678 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36)&nb...
2851 days ago
- ...ed applications. Training Resources: Bioinformatics Workshop (Webinars) Bioinformatics Training Slides Specialized Applications: De Novo Assembly Transcriptome analysis Base...
2678 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the o...
2871 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1277 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo rep...
2868 days ago
