Results for "long read"
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CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing yo...f coverage (or vice versa). Instructions: set the read length/configuration and geno...mes Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage...2195 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It is able to s...etion (INDEL) polymorphisms, and simulate reads with uniform substitution se...ulated polymorphisms, and writes the true read coordinates as well as the nu...
2902 days ago
- Decoding SAM flags This utility makes it easy to identify what are the properties of a read based on its SAM flag value,...
2895 days ago
- Kaiju is a program for the taxonomic clas...tagenomic high-throughput sequencing reads. Each read is directly assigned to a tax...robial eukaryotes. Kaiju translates reads into amino acid sequences, w...search can process up to millions of reads per minute using, for exampl...
2897 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM form...
2882 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools...heterogeneous data sets, including variations in sequencing depth, read lengths and mixtures of paired and single-end reads. A minimum of 20 to 30 genom...
2827 days ago
- ACT is a Java application for displaying pairwise comparisons between two or more DN...nteny, in the context of the entire sequences and their annotation. It can read complete EMBL, GENBANK a...
2826 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly pr...mation from paired-end/mate-pair/long reads to order and orient the inte...ided by the paired-end/mate-pair/long reads (for further details see Gao...ontains the wrapper script OPERA-long-read that enables scaffolding with...2824 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) applicat...tomatically via a simple GUI. Contig boundaries and read coverage can be displayed for...bled sequence data. BRIG also accepts SAM-formatted read-mapping files enabling genomi...2803 days ago
- DECIPHER is a software toolset that can be used to maintain, analyze, and decipher l...ence data. To install DECIPHER, see the Downloads page. To begin using DECIPHER read the "Getting Started DECIPHER...
2803 days ago
