2689 days ago
2687 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2686 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
...uctural variation discovery tool Both are contained within the PBSuite code...-- PBHoney -----Read The Paperhttp://www.biomedcentral.com/1471-2105/15/180/abstr...greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-c...2686 days ago
splitbam: splits a BAM by chromosomes
...having no read mapped -m | --mock : if option '-e', add a mock pair of sam records to the empty bam -p (output file/bam pattern) REQUIRED. MUST contain __CHROM__ and en...2685 days ago
YASRA: Reference based assembler
...assembly of short reads using a reference genome, which can differ substantially from the genome being se.... Special scoring sets were derived to improve the performance, both in runtime and quality for 454 and Il...2684 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...pulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and tex...nd annotation links to other web sites containing additional information...indeed its name stands for "Local Alignments with Java". Currently it exi...2684 days ago
2684 days ago
2682 days ago
2682 days ago