DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2563 days ago
I-PV: Interactive Protein Sequence Visualization
I-PV is a interactive data visualization software designed for inspection of protein sequences and mutation information. It is mainly used for Genetics and Bioinformatics. So what exactly makes it standout? http://i-pv.org/ipv_rec2560 days ago
slacTree: SVG Large Annotated Circular Tree drawing
A simple, extensible, Perl script for producing figures of large phylogenetic trees. While...more than 1000 taxa with custom annotations Because it is a single Perl script with very few dependencies, it is easy to run, a...2560 days ago
GeneProf: analysis of high-throughput sequencing experiment
...Analysis Wizards'). Versatile modules:Advanced users and data analysis experts benefit from GeneProf's br...e resource of fully analyzed next-generation sequencing data. Experimental results can be easily...2558 days ago
Omega2: metagenome assembly pipeline
...n. In comparison with three de Bruijn graph assemblers (SOAPdenovo, IDBA-UD and MetaVelvet), Omega provided comparable overall performance on a HiSeq 100-bp dataset and superior performance on a MiSeq 30...2553 days ago
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Perlbrew: admin-free perl installation management tool.
perlbrew is an admin-free perl installation management tool. The...terminal: \curl -L https://install.perlbrew.pl | bash Or, if you...# Linux \wget -O - https://install.perlbrew.pl | bash # FreeBSD...should be installed as /usr/bin/perlbrew or /usr/local...2552 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...ementations is limited. CrocoBLAST combines the accuracy and general applicability of BLAST with computational efficiency, accessibility, and user experience, so that NGS data can b...2538 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
...nd ncRNAs and RandomForest-based prediction model for the classification of ncRNAs into different classes. The structural information based graph properties were used for the develo...2546 days ago
iTOL: Interactive Tree Of Life
...tool for the display, annotation and management of phylogenetic trees. Explore your trees directly in the browser, and annotate them with various types of data. iTOL can easily vi...2545 days ago