NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, together wi...2018 days ago
HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
HECIL—Hybrid Error Correction with Iterative Learning—a hybrid error co...each iteration by incorporating knowledge gathered from previous iterations via data-driven confidence metrics ass...2011 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship pr...2011 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequen..., annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local...2011 days ago
2011 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy numbe...nts (CNVs) from whole-exome sequencing data. EXCAVATOR combines a three-s...states. We validate EXCAVATOR on three datasets and compare the results w...nts (CNVs) from whole-exome sequencing data.EXCAVATOR has been published...2008 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
ZENBU is a data integration, data analysis, and visualization system enhanced fo...es of next-generation-sequence-tag (NGS) based data. ZENBU allows for novel data exploration through "on-demand" data processing and interactive li...2008 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
kallisto is a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data, or more generally of target...d for alignment. On benchmarks with standard RNA-Seq data, kallisto can quant...2005 days ago
2005 days ago
EyeChrom: Visualizing Chromosome Count Data From Plants
It's goal is to show chromosmal data per genus. Select the genus, and the plot will show the records found for it in the Chromosome Counts Database. note: Report an issue vi...2004 days ago