Results for "R"
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...llows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to per...nalyses. The MEME Suite supports motif-based analysis of DNA...ows discovery of motifs with arbitrary insertions and deletio...ChIP). The MEME Suite is comprised of a collection of tools...2747 days ago
- Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion. Multip...he study of genome-wide evolutionary dynamics. Mauve has been de...being aligned. For example, a pair of Y. pestis genome...
2028 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacteria...fast gene recognition tool (written in very vanilla C). It c...ossesses a very sophisticated ribosomal binding site scoring...sm is unknown. Ease of Use: Prodigal can be run in one step...2741 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/
2722 days ago
- ...ickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or...ld environment 150GB+ of memory on at least one machine when...Progressive Cactus does not presently support installation i...to add the location of progressiveCactus/bin to yo...
2722 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomi...nome alignments to elucidate structural differences arising fr...lignments in a meaningful manner are needed to help researcher...tional information such as experimental data or annotations. H...2721 days ago
- ...fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best alignment per query and is dramatically fas...all possible alignments. Unlike other aligners that report all, or...t breakpoint penalty. YAHA can also report multiple mappings per de...
2719 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D B Rose, E P Garrison, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome analysis and inte...
2719 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled b...ene, or the constant regions around zinc finger binding resid...ality score is chosen.The algorithm is as follows:1.Find the...ength, uncalled bases, and user-supplied modules. http://neu...
2716 days ago
- EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.
2711 days ago
