Unicycler: Hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets w...(PacBio or Nanopore) where it runs a miniasm+Racon pipeline. For the best possible as...2431 days ago
2426 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-line annotation server...2426 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...imensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along...d displays the predicted ancestral genome structure in all the ancestral species within the phylogenetic r...2422 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...software on both simulated and biological realistic data and compared its performance with similar existin...Conclusion CHSMiner is characterized by its integrated workflow, fast speed and convenient usage. It wi...2422 days ago
2420 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...ction of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user int...contain both bacterial and algal sequences. This or similar types of analysis, in combination...2417 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (European eel) TULIP currently consists of to Perl scripts, tulipseed.perl and tulipbulb.perl. These are very much...2417 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...e MinION has huge potential applications. To enable these applications, the bioinformatics community will need to design and build a suite of tools specifically for MinION data. Re...2417 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Po...set onto the contigs obtained in the previous steps using BWA mem. Perform correction of contigs us...2417 days ago