AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data AfterQC can simply go through all fastq files in a folder and then...results of each fastq file/pair. Currently it supports processing data fro...2196 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaS...ipt and HTML5, with optional run-once data formatting tools written in P...ge sequencing. Quickly open and view data files on your computer withou...d more. BAM, BigBed, BigWig, and VCF data are...2196 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algorithms, it is feasib...embly from high-throughput sequencing data, they are very memory-intensi...limiting their applications to small data sets with few libraries. T...that contain hundreds of gigabases of data. Ne...2192 days ago
2192 days ago
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
NAViGaTOR – Network Analysis, Visualization, & Graphing TORonto is a sof...ases modularity, improves scaleability, extends input/output options, brings new network views and analysis algorithms. http://142.150...2192 days ago
RNA-seq Analysis Workshop Course Materials
RNAseq can be roughly divided into two "types": Reference genome-based - an assembled genome exists for a species for which an RNAseq experiment is performed. It allo...2192 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fas...of k-mer occurrences from a sequence file. Adds metadata in output for easy plotting....d to compare two K-mer hashes produced by different NGS read...2041 days ago
ReMILO: reference assisted misassembly detection algorithm using short and long reads.
ReMILO, a reference assisted misassembly detection algorithm that uses both short reads and PacBio SMRT long read...rt reads to both the contigs and reference genome, and then constructs a novel data str...2189 days ago
ASAR: Advanced metagenomic Sequence Analysis in R
An interactive data analysis tool for selection, aggregation and visualization of metagenomic data is presented. Functional analysis with a SEED hierarchy and pat...2186 days ago
Epiviz: an interactive visualization tool for functional genomics data.
Epiviz is an interactive visualization tool for functional genomics data. It supports genome navigation like other gen...owsers, but allows multiple visualizations of data within genomic regions using...ser-supplied visualizations. It also includes data fro...2186 days ago