IONiseR: tools for the quality assessment of data produced by Oxford Nanopore’s MinION sequencer
...l for this task. However, nanopore sequencing is an emerging and rapidly developing technology. It is not clear what will be most informative. We hope that IONiseR will p...2417 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains...ary files. The latter were tested under various operating systems, including Wind...). SIMA: Simultaneous Muliple Alignment of LC/MS Peak Lists, Bioinformatics 27(7)...2417 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...read sequences to generate the final unitig sequences. Thus the per-base error rate is similar t...ection. It also shows that minimap can be used as a read overlapper, even though it is probably...2413 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
...short reads. Unlike other hybrid approaches which combine these predictions for all sequences to be classified, RITA uses a pipeline to first identify cases where both types of classifier are in agreeme...2413 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) i...equence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly...encing reads.An updated version called OPERA-LG has been re-engineered w...ton K. H. Chia and Niranjan Nagarajan. OPERA-LG: efficient and exact sca...2413 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2413 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
...omosome analysis," explain the scientists. "The output of the program is Microsoft XL table and publish-ready idiogram picture." Find their paper openly published with us at: ...2413 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...t, the Oxford Nanopore MinION, has become available that we used for sequencing the S. cerevisiae genome. To make use of these data, we developed a novel open-source hybrid error correcti...2411 days ago
Computational Genomics: Applied Comparative Genomics
...ts to be grounded in theory and leave the course empowered to conduct independent genomic analyses. W...variant identification & analysis, gene expression & regulation, personal genome analysis, and ca...2411 days ago
2411 days ago