Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through all fastq files in a folder and then output three folders: go...2425 days ago
2424 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...t a newly implemented background annotation engine for DFAST, which is also available as a standalone command-line program. The new engine can annotate a typical-sized bacterial genome withi...2424 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...hat enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. O...2420 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) wit...including insertion/deletion and inversion could cause the degeneration of CHSs....ast greedy search algorithm and rigorous statistical validation, and its friendly...2420 days ago
2418 days ago
2418 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...analysis pipelines. Here we use Taxoblast, a simple pipeline with a graphical user interface, for the post...ating sequences in the published genome of the kelp Saccharina japonica. Analyses were based on multi...2415 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
...r implementations are likely to follow. Tulipseed takes as input alignments files of long reads to sparse short seeds, and outputs a graph and scaffold structures. Tulipbulb ad...2415 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinION has huge potential applications. To enable these applications, the bioinformatics comm...2415 days ago