2535 days ago
LIBSVM -- A Library for Support Vector Machines
...ibution estimation (one-class SVM). It supports multi-class classification. Since version 2.8, it implements an SMO-type algorithm proposed in this paper:R.-E. Fan, P.-H. Chen, and...2532 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical role in the emerging new branch of biology known as funct...2528 days ago
2527 days ago
2527 days ago
orthodotter: Synteny plots (oxford grid)
...t end -toPlot <arg> : give the x and y sets and the color separated by double-dots,...efault is black -bg : background color, default is transparent -fSize <int>...2525 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...m, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads deri...resulting contigs are ordered and oriented using paired reads separated by ∼2...2435 days ago
QuorUM: An Error Corrector for Illumina Reads
...orUM by correcting actual Illumina reads from genomes for which a reference assembly is available. QuorUM is distributed as an independent software package and as a module of the M...2434 days ago
Unicycler: Hybrid assembly pipeline for bacterial genomes
...an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) wh...2432 days ago
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
...output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.Currently it supports proce...2429 days ago