Results for "R"
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This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitable for both beginners and experts. Below are links to trainin...ata processing, as well as information for specialized applications. Tr...2684 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. The program has unique feat...designed to deal with bioinformatics data files and servers:...lective retrieval of only the required files (file masks, ls-...simultaneously BioDownloader has a built-in repository con...
2682 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2681 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained...downloads.----- PBJelly -----Read The Paper http://www....uencing reads (such as PacBio RS reads or long 454 reads in f...the high mappability of long reads (i.e., greater than 10,00...2681 days ago
splitbam: splits a BAM by chromosomes
...litbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if...omosome. A pair of 'mock' SAM-Records can also be added to th...create index. -t | --tmp (dir) tmp file directory -G (file...2680 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can dif...g sequenced. Mapping reads to reference genomes makes use of...rch path before installing YASRA.2679 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can...active dotplot, pip, and text representations of the alignmen...tes containing additional information about particular region...ed applet, with slightly different capabilities.2679 days ago
- A computational pipeline for identifying single-base substitutions between two closely related genomes without the help of a reference genome. DIAL works even...y, and it can be extended to determine small insertions/deletion...agement. http://www.bx.psu.edu/~ratan/
2679 days ago
- MyCC, an automated binning tool that combines genomic signatures, marker genes and optional contig coverages within one or multiple samples, in order to visualize the metagenomes and to identify the reconstructed genomic fragments. More at http://www.nature.com/articles/srep24175
2677 days ago
- ...omics is a standalone desktop software specifically designed for bacterial genome analysis. This program has a powerful multi-genome browser, whic...me sequences + annotation details) are compiled and saved in a spec...e CLG files are needed. ChunLab offers >40,000 CLG files of publ...
2677 days ago
