AMStat: display statistics of large sequence files from next generation sequencing projects
SAMStat is an efficient C program to quickly display statistics of large sequence f...t from this SAMStat can be used to verify individual processing steps in large analysis pipelines.2064 days ago
BamView: a free interactive display of read alignments in BAM data files
To run the application on UNIX from the downloaded jar file run the UNIX: java -mx512m -jar BamView.jar and extra command line options are given when '-h' is used: ja...2064 days ago
2064 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
...load and run this program directly. Or you could send us the genome sequence by email. Then we will do the analysis work for you. https://academic.oup.com/database/article/doi/10.1093/database/baw084/26304542059 days ago
pWhatsHap: a parallel, high-performance version of WhatsHap
...relevance of efficient haplotyping in several analysis pipelines, we have design...lkit developed in Python and supports genomics datasets in standard file formats....ns which is exponential in the coverage of the dataset. The parallel implementation o...2059 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
lordFAST is a sensitive tool for mapping long reads with high error rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provid...2046 days ago
SISRS: Site Identification from Short Read Sequences
Next-gen sequence data such as Illumina HiSeq reads. Data must be sorted into folders by taxon (e.g. species or genus). Paired reads in fastq format must be specified by _R1 and _R2 in the (otherwise identical) filenames. Paired and unpaired reads must have a fastq file extension.2045 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replica...unted for in the linear mixed model (LMM). GWASpro is optimized to handle GWAS data tha...2036 days ago
KEGG Mapper – Reconstruct Pathway
Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and metagenome annotations. The input data is...2031 days ago
2031 days ago