KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module...nerates annotations for each gene based on multiple databases about pathways, diseases..., it can accept either gene list or gene expression data as...2086 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with...the discovery, ranking, and taxonomic distribution analysis of colinear syntenic bloc...ent algorithm that identifies CSBs in large genomic datasets. The discovered CSBs are rank...2081 days ago
2081 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment o..., exon-capture, and targeted capture data, it...2080 days ago
vcfR: a package to manipulate and visualize VCF data in R
VcfR is an R package intended to allow easy manipulation and visualization of variant call format (VCF) data. Functions are provided to ra...from and write to VCF files. Once VCF data is read into R a parser funct...ions provide visualization of genomic data. On...2080 days ago
Scribl : HTML5 canvas genomics graphic library
Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file.2080 days ago
Referee: Genome assembly quality scores
Modern genome sequencing technologies provide a succint measure of quality at each...sembly. This allows for easy filtering of low quality sites for any downstream analysis. https://github.com/gwct/ref...2070 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
SAMStat is an efficient C program to quickly display statistics of large sequence f...t from this SAMStat can be used to verify individual processing steps in large analysis pipelines.2065 days ago
BamView: a free interactive display of read alignments in BAM data files
To run the application on UNIX from the downloaded jar file run the UNIX: java -mx512m -jar BamView.jar and extra command line options are given when '-h' is used: ja...2065 days ago
2065 days ago