geck: trio-based comparative benchmarking of variant calls
Determine the accuracy of our model by comparing the precision and recall of GATK Unified Genotyper and Haplotype...confidence SNPs of the NIST Ashkenazim trio and the two independent Platinum Genome trios....1886 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes and pseudogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions,...1874 days ago
FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an...1874 days ago
1856 days ago
gEVAL: Genome Evaluation Browser
The gEVAL Browser allows the evaluation of genome assemblies through its tools and pre-computed analyses. The strength...l assemblies to a “gold” standard for release as reference genomes1856 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.1807 days ago
The Extensive de novo TE Annotator (EDTA)
The EDTA package was designed to filter out false discoveries in raw TE candidates and...a high-quality non-redundant TE library for whole-genome TE annotations. Selection of...e using a manually curated TE library in the rice genome.1805 days ago
Cactus: a reference-free whole-genome multiple alignment program
Cactus is a reference-free whole-genome multiple alignment program. The principal algorit...tus uses substantial resources. For primate-sized genomes (3 gigabases each), you shou...to use approximately 120 CPU-days of compute per genome, with a...1801 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline desig...is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembl...1801 days ago
1787 days ago