FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
FUMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as...1863 days ago
1846 days ago
gEVAL: Genome Evaluation Browser
The gEVAL Browser allows the evaluation of genome assemblies through its tools and pre-computed analyses. The stre...emblies to a “gold” standard for release as reference genomes1846 days ago
gVolante: Completeness Assessment of Genome/Transcriptome Sequences
gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.1797 days ago
The Extensive de novo TE Annotator (EDTA)
The EDTA package was designed to filter out false disco...e a high-quality non-redundant TE library for whole-genome TE annotations. Selection of...nce using a manually curated TE library in the rice genome.1795 days ago
Cactus: a reference-free whole-genome multiple alignment program
Cactus is a reference-free whole-genome multiple alignment program. The principal alg...uses substantial resources. For primate-sized genomes (3 gigabases each), you shou...use approximately 120 CPU-days of compute per genome, with about 120 GB of RAM use...1791 days ago
dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements
...d quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small d...1791 days ago
1777 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengt...mic regions. As a leading model organism with small genome size and great biotechnologic...1777 days ago
Apollo: a sequence annotation editor
The well-established inaccuracy of purely computational methods for annotating genome sequences necessitates an int...ped to meet this need, enabling curators to inspect genome annotations closely and edit...1776 days ago