CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential fo...ts CHSs based on shared gene content alone. It implements fast greedy search algorithm a...2412 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It...se error rate is similar to the raw input reads. So far miniasm is in early development stage. It has only been teste...2403 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membrane pore has been postulated as a method for sequencing DNA...use of these data, we developed a novel open-source hybrid error correction algorithm N...2401 days ago
Musket: a multistage k-mer spectrum based corrector
Musket is a well-established leading next-generation sequencing read error correction algorithm targetting Illumina sequencing. This corrector employs the k-mer spectrum approach and introduc...2394 days ago
FOGSAA: Fast Optimal Global Sequence Alignment Algorithm
Sequence alignment algorithms are widely used to infer similarirty and the point of differences between pair of sequences. FOGSAA is a fast Global alignment algorithm....2392 days ago
2388 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see ht...es). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build...2388 days ago
1435 days ago
MeDuSa: a multi-draft based scaffolder
MeDuSa (Multi-Draft based Scaffolder), an algorithm for genome scaffolding. MeDuSa exploits information obtained from a set o...ation on graphs and implements an efficient constant factor approximation algorithm t...2324 days ago
Building Web UIs With Mojolicious Perl
Mojolicious is one of 3 leading web frameworks available i...ite. Mojolicious aims to provide a complete web development experience. It thus has no hard dependencies, comes with a built-in development and production server and man...2374 days ago