Results for "Gene Expression Analysis"
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HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from al...ads up to in-depth analyses. Importantly, HiCdat is focussed on the analysis of larger structural features...3044 days ago
- This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data sc...ide a unified, abstracted interface to multiple common gene annotation formats and the collec...
3037 days ago
Ensembl comparative genomics resources
...rained elements are obtained. Gene alignments are used to define Ensembl Protein Families, GeneTrees...ollapsible gene tree plots, a gene family locator and different alig...is extensively reused for the analysis of non-vertebrate species by...3028 days ago
- Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html
3027 days ago
- Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bioinform/b...
3027 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jeru...transcriptional complexity at at a given gene or locus, and then processes...part transcripts derived from paralogous genes. Bri...anscripts that corresponds to paralogous genes....3004 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...pt discovery and differential analysis with Cufflinks Differential expression analysis with R/Bioconductor Clustering of large expression datasets (microarray or RNA-Seq) Microarray Basic analysis of Affymetrix Gene Expression Arrays using R/Biocond...2970 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on m...2968 days ago
- AccNET is a Perl application that presents a new way to study the...compatible with common network analysis platforms. AccNET collects phylogenetic an...tion in a network improving the analysis capability. Networks offer a...elements acquired by horizontal gene transfers and not constricted by...
2806 days ago
- High-throughput genomics has revolutionized biological research, however,...ntitative assessment of genome assembly, gene set, and transcriptome comple...evolutionarily informed expectations of gene conte...enomics studies, and the annotated BUSCO gene mod...
2956 days ago
