Results for "Genome Sequence"
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Alignment of closely related whole genomes/scaffolds
...ed to a dramatic increase in the number of sequenced genomes for species across the tree...ls that can quickly compare multiple whole-genome sequences, millions of base pairs in l...been created to report new tools for whole genome alignments. Please report new...3061 days ago
- MAKER is a portable and easily configurable genome annotation pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome d...
3052 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3052 days ago
- ...s software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to t...s. RATT is able to transfer any entries present on a reference sequence, such as the systematic id or...
3052 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblie...ion Pilon requires as input a FASTA file of the genome along with one or more BAM fi...ysis to identify inconsistencies between the input genome a...
3051 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3051 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3051 days ago
- ...is a program for convenient conversion of genome coordinates (or annotation fi...F, VCF. CrossMap is designed to liftover genome coordinates between assemblies. It’s not a program for aligning sequences to reference genome. We do not recommend using Cro...
3051 days ago
- ...manipulation (mostly genomic sequences, alignments, variation etc...lyses. It also features three sequence alignment packages: Satsuma...program for high-sensitivity, genome-wide synteny; Papaya, an all-pu...nstitute.org/science/programs/genome-biology/spines
3050 days ago
- flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually...lift over is done because there is a new, improved genome a...
3049 days ago
