Results for "Protein Structure Prediction and Drug Design"
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ART is a set of simulation tools to generate synthetic next-generation sequencing rea...equencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. AR...is, including read alignment, de novo assembly, SNP and struct...2767 days ago
- ...e of Python scripts that wrap and connect bioinformatics tools...example from Illumina MiSeq), and assigns them to target genes...ample for each target region, and a separate file with the translated protein sequence. HybPiper also...of this predictable directory structure.
2766 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge...embly being on top of this list. Despite efforts to desi...y related reference. The idea is to combine de novo and reference-guided assembly in ord...2721 days ago
- Motif based sequence analysis suits T...ctions of unaligned nucleotide or protein sequences, and to perform a wide variety of...motif-based analysis of DNA, RNA and protein sequences. It provides mo...motifs with arbitrary insertions and...u will need to download and&nb...
2717 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-ge...r newer python 2.7 wget 64bit processor and build environment 150GB+ of...(ex hal2maf) in the submodules/ directory stru...Note that all dependencies are also built and in...
2692 days ago
- ...eatures that are specifically designed to deal with bioinformatics data files and servers: optimized to work with vast amount of data and very large file sets (~ 10,00...nization needs, including the Protein Data Bank (PDB) and National Center for Biotechnolog...
2653 days ago
- The official documentation of the Perl 6 programming language is...ished! Besides online browsing and searching, you can also view...renceIndex of built-in classes and roles. Routine ReferenceInde...the Perl 6 executable program and...so be interested in the Perl 6 design documents, which are in some...
2676 days ago
- Our basic strategy in building homology maps is to use exons that are ortholog...ons can be a combination of both exon predictions (e.g. Genscan) and annotations that have been ex...ns against all exons in other genomes and...on with alignments being performed in protei...
2672 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence...proach to aligning homologous protein, RNA or DNA sequences. Mu...ding Methods for Optimization and Control of Multiple Alignment...y for small-scale analyses of proteins or RNAs to large-scale p...roblems such as aligning thousands...of multiple alignment. This randomi...2672 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTURE for population inference....d from the Downloads page. FineSTRUCTURE R scripts, a facility f...erpret the results of ADMIXTURE and STRU...page provides information about and do...2665 days ago
