SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNAseq data from a cross (parents and progeny of each sex)...ocated on the non recombining part of sex chromosomes). How does SEX-DETector work?...2218 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or...out loosing the functionality that it is necessary in most of the cases. Other options can be changed in the stand-a...2216 days ago
2234 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
...ol for assembling haplotypes from DNA sequence reads, designed to "just work" with excellent speed and acc...reads with Hi-C reads) See below for specific examples of command line options and best practices for some o...2234 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of...hich can be highly advantageous in the scientific interpretations and research work. T...1902 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
git clone https://github.com/lh3/minimap2 cd minimap2 && make # long sequ...overlaps.paf # Nanopore read overlap # man page for detailed command line options man ./minimap2.1...2198 days ago
CGView - Circular Genome Viewer
CGView is a Java package for generating high quality, zoomable maps of circular gen...nerating visual output suitable for the web. Feature information and rendering options are supplied to the program u...2198 days ago
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
NAViGaTOR – Network Analysis, Visualization, & Graphing TORon...em for scaleable visualizing and analyzing networks. The current version, NAV..., improves scaleability, extends input/output options, brings new network views and analysis algorithms....2185 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided de novo assemblies with the intent of:...e bias as compared to mapping based approaches. The software is designed to work in...2162 days ago
2135 days ago