Results for "dRAD and ddRAD sequencing"
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CNIDARIA: fast, reference-free phylogenomic clustering
Motivation: Identification of biological specimens is a major r...e methods analyse unprocessed sequencing data without relying o...to arbitrarily large genomes and arbitrarily large phylogeneti...l tool for clustering genomic and t...species level. Availability and Implementation: Cnidaria is written...2907 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samtools, next-gen, next-generation, sequencing, bowtie, sam, bam, pri...sp; Updated to use samtools 1.1 and b...provides an introduction to SAMtools, and is geared towards those new to next-...
2900 days ago
- ...ate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substitution seque...s. It does not generate INDEL sequencing errors, but this can be partl...the simulated polymorphisms, and writes the true read coordinates as...
2900 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will ta...ygous haploid genomes. Use a different assembler for metagenomes and heterozygous diploid or polyploid or...
2844 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is dire...e database containing microbial and viral protein sequences. By...optionally also including fungi and m...n Menzel, P. et al. (2016) Fast and sensitive taxonomic classification f...
2896 days ago
- FQC is software that facilitates quality control of FASTQ files by carr...otocol using FastQC, parsing results, and aggregating quality metrics i...signed to richly summarize individual seque...uration files to manipulate the pages and tabs, and is extensible with CSV dat...
1300 days ago
- Microbiome analysis using a single application MEGAN6 is a compre..., word clouds, Voronoi tree maps and many other charts PCoA, clustering and networks Supports metadata...ing hundreds of millions of seque...a large range of analysis tools, and is under active development....
2868 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using sequencing data. The methods are...enome STRiP looks both across and w...sets, including variations in sequencing depth, read lengths and mixtures of paired and single-end re...
2825 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo&n...ence (contigs) arranged in thousands of scaffolds instead of smal...bers of chromosomes. Confirming and i...& Wurm (2011) Visualization and quality assessment of de novo genome...
2838 days ago
- Redundans pipeline assists an assembly of heterozygous gen...bled contigs, paired-end and/or mate pairs sequencing libraries and returns scaffolded homoz...es flexible toward many sequencing technologies (Illumina, 454 or Sanger) and library types (paired-end, mate pair...
2830 days ago
