Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go through...2429 days ago
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DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...ence databases. DFAST was originally started as an on-line annotation server, and to date, over 7,000 jobs have been pr...d-line program. The new engine can annotate a typical-sized bacterial gen...Implementation The software is implemented in Python 3 and runs in both...2427 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...is a genome browser that enables users to navigate in genomes in several dimensi...evolutionary time. Once a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all its orthologous and...2423 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...s. Results Here we present a Java software CHSMiner that detects CHSs based on shared gene content alone. It implements fast g...ing software and data source. Conclusion CHSMiner is characterized by its integrated workfl...2423 days ago
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Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences...eline with a graphical user interface, for the post-assembly d...ble at http://sdittami.altervista.org/taxoblast and...2419 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (European eel) TULIP currently consists of to Perl scri...pts, tulipseed.perl and tulipbulb.perl. These are very much intended as prototypes, and additi...2418 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
...ore MinION device represents a unique sequencing technology. As a mobile sequenci...the USB port of a laptop, the MinION has huge potential applications. To enable...ics community will need to design and build a suite of tools specifically for Min...2418 days ago