Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transitive edges and trimming short...of the overlap graph and then merged to contigs and scaffolds u...a MiSeq 300-bp dataset. In comparison with Celera on the MiSeq...2552 days ago
2552 days ago
2552 days ago
Perlbrew: admin-free perl installation management tool.
perlbrew is an admin-free perl installation management tool. The latest version is 0.79, read the release note: Release 0.79. Copy &...nstall.perlbrew.pl | bash Or, if your system does not have...r more advanced installation process, please read the pe...2550 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...ocal sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of...e nucleotide sequences of different pieces of DNA. The Basic L...currently implemented in all free and commercial bioinformati...iciency, accessibility, and user experience, so that NGS data...2537 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
RNAcon is a web-server for the prediction and classification of non-coding RNAs. It uses SVM-based model fo...imination between coding and ncRNAs and RandomForest-based pre...nt classes. The structural information based graph properties...A. and Raghava, G.P.S. (2014) Prediction and classification of...2545 days ago
iTOL: Interactive Tree Of Life
Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic trees. Explore your trees directly in...e browser, and annotate them with various types of data. iTOL can...lar and regular cladograms or phylograms, exploring and navigating...2544 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data ab...nalysis, but some of its modules concern population genetics, while o...e modules installed. http://mesquiteproject.wikispaces.com/2544 days ago
2543 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
Mulan performs multiple (2 or more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary se...f the species. It combines refine and tba t...formats, automated data upload from the UCSC Genome Browse...2542 days ago